This MCQ module is based on: Genetic Code Translation
Genetic Code Translation
This assessment will be based on: Genetic Code Translation
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Genetic Code Translation
6.5 The Genetic Code — Three-Letter Words of Life
The information in mRNA is read in groups of three nucleotides called codons. Each codon specifies one amino acid (or a stop signal). With 4 bases (A, U, G, C) and 3 positions per codon, there are 4³ = 64 possible codons.
6.5.1 Salient Features of the Genetic Code
- Triplet code: Three bases code for one amino acid. (Why not 2? 4²=16, too few. Why not 4? Wasteful.)
- Universal: the same code applies to almost all organisms — bacteria, plants, humans, viruses (with rare exceptions in mitochondria and a few protozoa).
- Degenerate: most amino acids are coded by more than one codon (synonymous codons). E.g., Leucine: UUA, UUG, CUU, CUC, CUA, CUG.
- Non-overlapping: codons are read sequentially without overlap. Each base belongs to only one codon.
- Comma-less: no punctuation between codons; reading proceeds continuously.
- Specific: each codon codes for only ONE amino acid (no ambiguity).
- Has start and stop signals: AUG = start (Met); UAA, UAG, UGA = stop.
6.5.2 Codon Table
| 1st base ↓ | 2nd base → | 3rd ↓ | |||
|---|---|---|---|---|---|
| U | C | A | G | ||
| U | UUU Phe | UCU Ser | UAU Tyr | UGU Cys | U |
| UUC Phe | UCC Ser | UAC Tyr | UGC Cys | C | |
| UUA Leu | UCA Ser | UAA Stop | UGA Stop | A | |
| UUG Leu | UCG Ser | UAG Stop | UGG Trp | G | |
| C | CUU Leu | CCU Pro | CAU His | CGU Arg | U |
| CUC Leu | CCC Pro | CAC His | CGC Arg | C | |
| CUA Leu | CCA Pro | CAA Gln | CGA Arg | A | |
| CUG Leu | CCG Pro | CAG Gln | CGG Arg | G | |
| A | AUU Ile | ACU Thr | AAU Asn | AGU Ser | U |
| AUC Ile | ACC Thr | AAC Asn | AGC Ser | C | |
| AUA Ile | ACA Thr | AAA Lys | AGA Arg | A | |
| AUG Met (start) | ACG Thr | AAG Lys | AGG Arg | G | |
| G | GUU Val | GCU Ala | GAU Asp | GGU Gly | U |
| GUC Val | GCC Ala | GAC Asp | GGC Gly | C | |
| GUA Val | GCA Ala | GAA Glu | GGA Gly | A | |
| GUG Val | GCG Ala | GAG Glu | GGG Gly | G | |
This codon table was painstakingly cracked by Marshall Nirenberg, Har Gobind Khurana (Indian-American), Severo Ochoa and others between 1961–66 — earning Nirenberg, Khurana and Holley the Nobel Prize in 1968.
6.6 Translation — mRNA to Protein
Translation is the process where the message in mRNA is decoded by the ribosome to synthesize a protein. Three components are essential: mRNA, ribosome, and tRNA charged with amino acids.
6.6.1 The tRNA — Adapter Molecule
Transfer RNA acts as the physical link between codon (mRNA) and amino acid. Each tRNA:
- Has a clover-leaf secondary structure (L-shaped in 3D).
- Carries a specific amino acid at its 3' end (CCA tail).
- Has an anticodon — three bases complementary to the mRNA codon — at the bottom loop.
- Is "charged" by enzymes called aminoacyl-tRNA synthetases — one for each amino acid.
6.6.2 The Ribosome
The ribosome is the cellular machine that performs translation. It has two subunits:
| Prokaryotic (70S) | Eukaryotic (80S) | |
|---|---|---|
| Large subunit | 50S (23S + 5S rRNA + 31 proteins) | 60S (28S + 5.8S + 5S rRNA + 49 proteins) |
| Small subunit | 30S (16S rRNA + 21 proteins) | 40S (18S rRNA + 33 proteins) |
| Sites | A (acceptor), P (peptidyl), E (exit) | Same: A, P, E sites |
The peptidyl transferase activity that forms peptide bonds is performed by the rRNA itself — making the ribosome a ribozyme (RNA enzyme).
6.6.3 Steps of Translation
1. Initiation: The small ribosomal subunit binds mRNA at the start codon (AUG). Initiator tRNA (carrying Met) base-pairs with AUG. Large subunit joins to form complete ribosome.
2. Elongation: The cycle repeats:
- A new charged tRNA enters the A site; its anticodon pairs with the next mRNA codon.
- A peptide bond forms between the amino acid in the A site and the growing peptide chain in the P site (catalysed by peptidyl transferase / rRNA).
- Ribosome moves one codon (translocation): the A-site tRNA shifts to P; the empty P-site tRNA moves to E and exits.
3. Termination: When a stop codon (UAA / UAG / UGA) reaches the A site, no tRNA matches. Release factors bind, the polypeptide is released, ribosome dissociates.
🧬 Interactive: Codon → Amino Acid Translator
Enter an mRNA sequence (5'→3') and see the protein it codes for:
Setup: An mRNA reads: 5'-AUGCUUCAGUUUUAA-3'
(a) Codons: AUG-CUU-CAG-UUU-UAA = 5 codons (one is stop).
(b) Met-Leu-Gln-Phe-STOP = 4 amino acid protein: Met-Leu-Gln-Phe.
(c) CUU → CUG. CUG also codes for Leu! So the protein is unchanged — this is a silent mutation, made possible by the degeneracy of the genetic code.
Worked Examples
Worked Example 1: mRNA → Protein
Translate the mRNA: 5'-AUGGCAUCCUAA-3'.
AUG = Met (Methionine) — start
GCA = Ala (Alanine)
UCC = Ser (Serine)
UAA = STOP
Protein: Met–Ala–Ser (3 amino acids long; STOP is not translated as an amino acid).
Worked Example 2: Effect of Mutation
The mRNA AUG-GAA-UCG codes for Met-Glu-Ser. What happens if a mutation changes GAA → GUA in the second codon?
Mutated: AUG-GUA-UCG → Met-Val-Ser
Type: Missense mutation — one amino acid replaced by another. The mutation A→U at position 2 of the second codon swapped Glu (acidic) for Val (non-polar).
Real-world example: This is exactly the mutation in sickle cell anaemia — Glu→Val substitution on β-globin position 6. A single base mutation has dramatic consequences.
Worked Example 3: Reading Frame
Compare the protein from these two mRNAs: (i) AUG-GCA-UUC-UAA and (ii) AUG-GCA-UUC-UAA after a single insertion of "G" between the start codon and second codon (AUG-GGC-AUU-CUA-A). Which kind of mutation is this?
After "G" insertion: AUG-GGC-AUU-CUA-A → Met-Gly-Ile-Leu-... (reading frame entirely changed).
Type: Frameshift mutation. A single base insertion shifts the reading frame for ALL downstream codons. This usually creates a completely different (often non-functional) protein, OR a premature stop codon.
Why it matters: Insertions/deletions of multiples of 3 do NOT cause frameshift; only ±1 or ±2 bases do. Frameshifts often cause genetic disease (e.g., some forms of Duchenne muscular dystrophy).
🎯 Competency-Based Questions
Q1. Total number of codons in the standard genetic code is:L1 Remember
Q2. Fill in the blank: The codon AUG codes for the amino acid _____ and also serves as the _____ codon. L2 Understand
Q3. The mRNA sequence 5'-AUGUCGAAGUAA-3' codes for which protein? L3 Apply
AUG → Met (start)
UCG → Ser
AAG → Lys
UAA → STOP
Protein: Met–Ser–Lys (a tripeptide).
Q4. Analyse: Why is the genetic code described as 'degenerate but unambiguous'? Give one biological advantage. L4 Analyse
- Degenerate: Most amino acids are coded by multiple codons (Leu has 6, Ser has 6). 64 codons → 20 amino acids means redundancy.
- Unambiguous: Each codon codes for exactly ONE amino acid (no codon codes for two different amino acids).
- Mutation buffer: Many point mutations at the third codon position don't change the amino acid (silent mutations). E.g., GCU, GCC, GCA, GCG all code for Alanine.
- This protects the protein from harmful effects of common DNA replication errors.
- Reduces the impact of UV/radiation-induced mutations.
Q5. HOT (Create): Predict the consequences of a mutation that changes a stop codon (UAA) to a coding codon (CAA, glutamine). L6 Create
- Translation continues past the original stop: The ribosome reads the next codon (in 3' UTR) instead of stopping. This produces an extended protein.
- Eventually translation stops at the next in-frame stop codon (in the 3' UTR).
- The extra C-terminal amino acids may:
- Disrupt protein folding → reduced/no function.
- Add a target sequence (e.g., for degradation) → instability.
- Add a signal that mislocalizes the protein.
- mRNA stability may decrease: Read-through can trigger non-stop decay pathway.
- Disease example: α-thalassemia is sometimes caused by stop-codon read-through producing extended haemoglobin chains that don't assemble correctly.
🧠 Assertion–Reason Questions
Choose: (A) Both true, R explains A. (B) Both true, R doesn't explain A. (C) A true, R false. (D) A false, R true.
A: Each amino acid is specified by exactly one codon.
R: The genetic code has 64 codons.
A: Ribosomes are called ribozymes.
R: The peptidyl transferase activity is catalysed by rRNA, not by protein.
A: The genetic code is universal across all life forms.
R: All organisms share a common evolutionary ancestor.