આ MCQ મોડ્યુલ આના પર આધારિત છે: Enzymes
Enzymes
આ મૂલ્યાંકન આના પર આધારિત હશે: Enzymes
મૂલ્યાંકન બનાવવામાં તેમની સામગ્રી સામેલ કરવા ચિત્રો, PDF અથવા Word દસ્તાવેજ અપલોડ કરો.
Enzymes
9.10 Enzymes — Nature's Catalysts
Enzymes are biological catalysts — they accelerate biochemical reactions without being consumed. Almost all enzymes are proteins (with a few notable RNA exceptions called ribozymes).
Reactions catalysed by enzymes proceed much faster than uncatalysed ones. For example, the conversion of carbon dioxide to bicarbonate (in your red blood cells):
CO₂ + H₂O ⇌ H₂CO₃ ⇌ H⁺ + HCO₃⁻
...takes hours uncatalysed. With carbonic anhydrase, each enzyme molecule processes 600,000 CO₂ molecules per second. Without it, CO₂ transport in blood would be impossible.
9.10.1 Properties of Enzymes
- Catalytic: Lower the activation energy of reactions.
- Highly specific: Each enzyme catalyses one (or few) specific reaction(s).
- Reusable: Not consumed; emerge unchanged after catalysis.
- Sensitive: Affected by temperature, pH, ionic environment.
- Regulated: Their activity can be turned on/off by the cell.
9.10.2 The Active Site — Where Catalysis Happens
Each enzyme has a small region — the active site — where the substrate binds. The fit between active site and substrate is so precise that Emil Fischer (1894) compared it to a lock and key:
Enzyme (Lock) + Substrate (Key) → Enzyme-Substrate complex → Enzyme + Product
Daniel Koshland (1958) refined this to the induced-fit model — the active site is not rigid; it moulds slightly around the substrate. It's more like a hand fitting into a glove than a key into a lock.
9.10.3 Energy of Activation
Every reaction needs an initial input of energy — the activation energy (Ea) — to begin. Imagine a ball that must be pushed up to the top of a hill before rolling down to a valley.
Enzymes don't change the start or end energy levels — they lower the activation energy, providing an alternative reaction path through the enzyme–substrate complex.
9.10.4 Factors Affecting Enzyme Activity
(a) Temperature
Each enzyme has an optimum temperature (usually 35–45°C for human enzymes). Above this, the protein denatures and activity drops sharply. Below it, molecular collisions are too slow.
(b) pH
Each enzyme has an optimum pH:
- Pepsin: optimum pH ~2 (works in stomach acid)
- Salivary amylase: optimum pH ~7 (neutral saliva)
- Pancreatic enzymes (trypsin): optimum pH ~8 (alkaline small intestine)
(c) Substrate Concentration
As [S] rises, the rate of reaction increases until all enzyme molecules are working at maximum capacity. At this point — Vmax — adding more substrate has no effect because enzymes are saturated. The relationship is described by the Michaelis-Menten equation:
V = (Vmax × [S]) / (Km + [S])
9.10.5 Cofactors — Helpers of Enzymes
Many enzymes need a non-protein helper called a cofactor to function. The protein part alone is called the apoenzyme; with the cofactor it becomes the active holoenzyme.
| Type | Bond | Examples |
|---|---|---|
| Prosthetic group | Tight/covalent, permanent | Haem in peroxidase, catalase; FAD in succinate dehydrogenase |
| Coenzyme | Loose, transient (binds during catalysis only) | NAD⁺, NADP⁺, FAD, Coenzyme A, ATP — many from vitamins |
| Metal ion cofactor | Coordinated to enzyme | Zn²⁺ (carboxypeptidase, carbonic anhydrase); Mg²⁺ (kinases); Fe²⁺ (cytochromes); Cu²⁺ (cytochrome oxidase) |
9.10.6 Classification of Enzymes (IUBMB) — Six Classes
| EC # | Class | Reaction Type | Example |
|---|---|---|---|
| 1 | Oxidoreductases | Oxidation-reduction (transfer of electrons / H) | Dehydrogenases, oxidases (e.g., succinate dehydrogenase) |
| 2 | Transferases | Transfer of functional group (—CH₃, —NH₂, —PO₃²⁻) | Aminotransferase, kinase, hexokinase |
| 3 | Hydrolases | Hydrolysis (breaking bonds by adding water) | Trypsin, lipase, amylase, peptidase |
| 4 | Lyases | Breaking bonds by elimination (not hydrolysis); forms double bonds | Aldolase, fumarase, decarboxylase |
| 5 | Isomerases | Intra-molecular rearrangement | Glucose-6-phosphate isomerase, triose phosphate isomerase |
| 6 | Ligases | Joining of two molecules using ATP energy | DNA ligase, glutamine synthase |
🎯 Interactive: Enzyme Conditions Explorer
See how enzyme rate changes as you vary temperature and pH for different enzymes:
Relative Activity: 100%
—
Setup: Take 4 small test tubes labelled A, B, C, D. To each, add 5 mL of 3% hydrogen peroxide (H₂O₂). Then:
- Tube A: Drop in a small piece of fresh liver. Observe.
- Tube B: Drop in a piece of boiled liver. Observe.
- Tube C: Drop in a small piece of fresh potato.
- Tube D: Add a few drops of dilute HCl, then drop in fresh liver.
Tube A: Vigorous bubbling — oxygen gas (O₂) released. Liver contains catalase, which breaks H₂O₂ → 2 H₂O + O₂. Catalase is one of the fastest enzymes known.
Tube B: NO bubbling. Boiling denatured the catalase protein — irreversibly destroyed its 3-D structure → no enzyme activity.
Tube C: Bubbling, but less than A. Potato also contains catalase (less than animal liver).
Tube D: Little/no bubbling. Acidic pH (~2-3) is far from catalase's optimum (~7) → enzyme denatures.
Conclusion: Catalase is a real, specific protein. Heat or extreme pH destroys it. The bubbles you saw were oxygen — exactly why hydrogen peroxide foams when applied to a cut: the wound's catalase converts it to oxygen instantly.
Worked Examples
Worked Example 1: Classify the Enzyme
Classify each enzyme into one of the 6 IUBMB classes: (a) DNA polymerase, (b) maltase, (c) glucose-6-phosphate isomerase, (d) lactate dehydrogenase, (e) hexokinase.
(b) Maltase — hydrolyses maltose (disaccharide) into 2 glucose using water → Hydrolase (Class 3).
(c) Glucose-6-phosphate isomerase — converts glucose-6-P ↔ fructose-6-P (rearrangement) → Isomerase (Class 5).
(d) Lactate dehydrogenase — removes 2H from lactate to make pyruvate → Oxidoreductase (Class 1).
(e) Hexokinase — transfers phosphate from ATP to glucose → Transferase (Class 2).
Worked Example 2: Compute Km
An enzyme has Vmax = 100 µmol/min. When [S] = 5 mM, the rate is 50 µmol/min. What is the Km?
Vmax/2 = 100/2 = 50 µmol/min.
At V = 50 µmol/min, [S] = 5 mM.
Therefore, Km = 5 mM.
Interpretation: Km of 5 mM is moderate. Lower Km would mean tighter binding (less substrate needed to reach half-Vmax). Compare:
- Hexokinase: Km for glucose ≈ 0.1 mM (very tight)
- Glucokinase (liver): Km for glucose ≈ 10 mM (loose — responds only to high blood glucose).
🎯 Competency-Based Questions
Q1. Which class of enzyme catalyses the breaking of a bond by adding water? L1 Remember
Q2. Distinguish between coenzyme and prosthetic group, with one example of each. L2 Understand
Prosthetic group: Cofactor that binds permanently (covalently or very tightly) to the enzyme. Always present. Example: haem group in catalase / peroxidase (an Fe-containing porphyrin).
Analogy: Coenzyme is like a tool a worker borrows for each task and returns; prosthetic group is like the worker's own permanent equipment.
Q3. Why does pepsin work in the highly acidic stomach (pH 2) while trypsin requires alkaline pH 8? L4 Analyse
- Pepsin: Active site needs critical residues like aspartate to be PROTONATED (—COOH) for catalysis. At pH 2, —COOH is the dominant form. At neutral pH, it deprotonates → active site collapses.
- Trypsin: Active site needs aspartate residue to be DEPROTONATED (—COO⁻) to recognize basic substrate (lysine/arginine). At pH 8, this charge is correct; at acidic pH, the site is wrongly charged.
Q4. Evaluate: "All enzymes are proteins; all proteins are enzymes." Evaluate both clauses. L5 Evaluate
- Almost all known enzymes are proteins.
- Exception: Ribozymes — RNA molecules with catalytic activity. E.g., the peptidyl transferase activity in ribosomes is RNA-catalysed; self-splicing introns are RNA enzymes.
- Discovered by Cech and Altman (Nobel 1989). They support the "RNA World" hypothesis for life's origin.
- Proteins serve many non-enzymatic functions: structural (collagen, keratin), transport (haemoglobin), hormonal (insulin), defensive (antibodies), contractile (actin, myosin), receptors, regulators.
- Only a SUBSET of proteins are enzymes.
Q5. HOT (Create): Design a simple experiment to estimate the optimum temperature of an unknown enzyme. L6 Create
- Materials: Enzyme solution; substrate solution (with measurable product, e.g., starch + iodine for amylase; or H₂O₂ for catalase); water baths set at 0, 10, 20, 30, 40, 50, 60, 70°C; stopwatch; pH 7 buffer.
- Procedure: Pre-warm 5 mL substrate + enzyme separately to each temperature. Mix at t=0. Time how long until reaction is complete (or measure product after fixed time).
- Replicates: 3 trials at each temperature; calculate mean rate (1/time × concentration).
- Controls:
- Enzyme + boiled enzyme (denatured) → confirms enzyme is responsible.
- Substrate without enzyme → confirms no spontaneous reaction.
- Buffer to maintain pH 7 constant (so only temp varies).
- Plot: Rate (Y-axis) vs Temperature (X-axis). Bell-shaped curve. Peak = optimum temp.
- Expected: Rate rises with T (more collisions) until denaturation begins; then sharp fall.
🧠 Assertion–Reason Questions
Choose: (A) Both true, R explains A. (B) Both true, R doesn't explain A. (C) A true, R false. (D) A false, R true.
A: Enzymes lower the activation energy of a reaction.
R: They provide an alternative reaction pathway through the enzyme-substrate complex with lower energy barrier.
A: Above 60°C most human enzymes are inactive.
R: High temperature breaks the H-bonds and hydrophobic interactions holding the enzyme's tertiary structure → denaturation.
A: A coenzyme is consumed during the reaction it catalyses.
R: Coenzymes are non-protein organic molecules that carry chemical groups between reactions.