આ MCQ મોડ્યુલ આના પર આધારિત છે: Replication Transcription
Replication Transcription
આ મૂલ્યાંકન આના પર આધારિત હશે: Replication Transcription
મૂલ્યાંકન બનાવવામાં તેમની સામગ્રી સામેલ કરવા ચિત્રો, PDF અથવા Word દસ્તાવેજ અપલોડ કરો.
Replication Transcription
6.3 DNA Replication — Copying the Genetic Code
Watson and Crick noted that the structure of DNA — two complementary strands — immediately suggests how it copies itself. Each strand can serve as a template for synthesizing the new partner strand. They proposed semi-conservative replication: each daughter DNA contains one old (parental) strand + one new strand.
6.3.1 Meselson-Stahl Experiment (1958)
Matthew Meselson and Franklin Stahl elegantly proved semi-conservative replication using E. coli and density-gradient centrifugation:
- Grew bacteria for many generations in heavy nitrogen (¹⁵N) medium → all DNA contained heavy nitrogen → "heavy DNA" band on density gradient.
- Transferred bacteria to light nitrogen (¹⁴N) medium and let them divide once.
- After 1st generation: DNA showed an intermediate density band (¹⁵N/¹⁴N hybrid).
- After 2nd generation: two bands — half intermediate, half light. This pattern is predicted ONLY by semi-conservative replication.
| Model | 1st generation | 2nd generation |
|---|---|---|
| Conservative (parent stays intact, makes copy) | 1 heavy + 1 light | 1 heavy + 3 light |
| Semi-conservative ✓ (each strand becomes template) | All hybrid | 2 hybrid + 2 light |
| Dispersive (mixture of old + new in each strand) | All hybrid | All hybrid |
6.3.2 Mechanism of DNA Replication
Replication begins at specific sites called origins of replication. Several enzymes work together:
| Enzyme | Function |
|---|---|
| Helicase | Unwinds the double helix, breaking H-bonds |
| Topoisomerase / Gyrase | Relieves supercoiling tension ahead of the fork |
| SSB proteins | Single-strand binding — keep separated strands stable |
| Primase | Synthesizes RNA primers (DNA polymerase needs primer to start) |
| DNA polymerase III | Adds nucleotides only in 5'→3' direction |
| DNA polymerase I | Replaces RNA primers with DNA |
| DNA ligase | Joins Okazaki fragments on lagging strand |
6.3.3 Leading and Lagging Strands
Because DNA polymerase only synthesises in 5'→3' direction, the two antiparallel strands are replicated differently:
- Leading strand (3'→5' template): synthesised continuously, in the same direction as fork movement.
- Lagging strand (5'→3' template): synthesised discontinuously as short fragments called Okazaki fragments — these are joined later by DNA ligase.
6.4 Transcription — DNA → RNA
Transcription is the process of making an RNA copy from a DNA template. The enzyme that catalyses it is RNA polymerase.
6.4.1 Key Features
- Only ONE strand of DNA is used as template — called the template strand (3'→5').
- The other strand has the same sequence as RNA (with T → U) and is called the coding strand / sense strand.
- RNA is synthesised in 5'→3' direction.
- RNA differs from DNA: contains uracil (U) instead of thymine; has ribose sugar; usually single-stranded.
6.4.2 Steps of Transcription
- Initiation: RNA polymerase binds at the promoter (a specific DNA sequence upstream of the gene). With help from sigma factor (in bacteria), the helix unwinds locally.
- Elongation: RNA polymerase moves along the template, adding ribonucleotides 5'→3' according to base-pairing rules: A→U, T→A, G→C, C→G.
- Termination: RNA polymerase reaches a terminator sequence; the RNA transcript is released, and the polymerase falls off.
6.4.3 Three Major Types of RNA
| RNA type | Function | % of total RNA |
|---|---|---|
| mRNA (messenger) | Carries genetic message from DNA to ribosome; specifies amino acid sequence of protein | ~5% |
| tRNA (transfer) | Carries amino acids to the ribosome; reads mRNA codons via its anticodon | ~15% |
| rRNA (ribosomal) | Structural and catalytic component of the ribosome; performs peptide bond formation | ~80% |
In prokaryotes, a single RNA polymerase makes all three types. In eukaryotes, three different polymerases make them: RNA pol I (rRNA), pol II (mRNA), pol III (tRNA + small RNAs).
6.4.4 Post-transcriptional Processing in Eukaryotes
The newly made eukaryotic mRNA undergoes processing before leaving the nucleus:
- 5' capping: a methylated guanine cap is added to the 5' end (protects from degradation).
- 3' polyadenylation: a tail of ~200 adenines (poly-A tail) added to 3' end (stability + transport).
- Splicing: non-coding introns are removed; exons (coding parts) are joined together to form mature mRNA.
🧬 Interactive: DNA → mRNA Transcriber
Enter a DNA template strand (3'→5') and see the transcribed mRNA:
Setup: A bacterial culture is grown for 4 generations in heavy ¹⁵N medium (all DNA heavy), then transferred to ¹⁴N medium and allowed to divide TWICE.
After 1st division: 2 hybrid molecules (each has one ¹⁵N old strand + one ¹⁴N new strand).
After 2nd division: Each hybrid → 1 hybrid (the ¹⁵N old strand is template + new ¹⁴N) + 1 light (the ¹⁴N strand is template + new ¹⁴N).
Total = 4 molecules. (a) Hybrid: 2/4 = 50%; (b) Light: 2/4 = 50%; (c) Heavy: 0/4 = 0%.
This pattern (hybrid + light, no heavy) directly proves semi-conservative replication.
Worked Examples
Worked Example 1: mRNA from Coding Strand
The coding strand of a gene reads: 5'-ATGGCATTAGCC-3'. Write the mRNA produced and identify the template strand.
Step 2: Coding strand: 5'-ATGGCATTAGCC-3'
Template strand (complementary, antiparallel): 3'-TACCGTAATCGG-5'
mRNA (read off template, 5'→3'): 5'-AUGGCAUUAGCC-3'
Note: mRNA = coding strand with U instead of T. This shortcut works for any prokaryotic gene without introns.
Worked Example 2: Replication Time
The E. coli genome is ~4.6 million base pairs. If DNA polymerase synthesises ~1000 bases/second, how long does it take to replicate (assuming a single replication fork)?
But E. coli divides every ~20 minutes! How? Bidirectional replication — replication starts at one origin (oriC) and proceeds in both directions, halving the time. Plus, multiple origins in fast-growing cells. So effective replication is ~38 minutes — fits the doubling time.
Eukaryotic genomes (~3 billion bp in humans) need thousands of origins to replicate in S phase (~6–8 hours).
🎯 Competency-Based Questions
Q1. The Meselson-Stahl experiment proved that DNA replication is:L1 Remember
Q2. Fill in the blank: The lagging strand is synthesised in short fragments called _____. L2 Understand
Q3. If a DNA template reads 3'-TACGGTACG-5', what is the corresponding mRNA sequence? L3 Apply
Q4. Compare: List 3 differences between leading and lagging strand synthesis. L4 Analyse
| Feature | Leading strand | Lagging strand |
|---|---|---|
| Direction of synthesis | Same as fork movement | Opposite to fork movement |
| Continuity | Continuous (one long piece) | Discontinuous (Okazaki fragments) |
| Number of primers needed | Just one (start) | Many (one per fragment) |
| Need for DNA ligase | Not needed (1 piece) | Required (joins fragments) |
Q5. HOT (Create): A scientist invents a drug that inhibits topoisomerase. Predict the immediate effects on bacterial replication and explain why such drugs could be used as antibiotics. L6 Create
- Topoisomerase relieves supercoiling tension ahead of the replication fork. Without it, the DNA ahead of the fork becomes increasingly twisted.
- The replication fork stalls; the DNA snaps under stress.
- The bacterium cannot replicate its genome → cannot divide → eventually dies.
- Bacterial topoisomerase (DNA gyrase) is structurally different from human topoisomerase II.
- Drugs like fluoroquinolones (ciprofloxacin, levofloxacin) selectively inhibit bacterial gyrase — sparing human cells.
- This makes them effective broad-spectrum antibiotics for urinary tract infections, pneumonia, etc.
- Resistance develops via point mutations in the gyrase gene — illustrating the urgency of antibiotic stewardship.
🧠 Assertion–Reason Questions
Choose: (A) Both true, R explains A. (B) Both true, R doesn't explain A. (C) A true, R false. (D) A false, R true.
A: DNA replication produces two daughter molecules each containing one parental and one new strand.
R: DNA replication is semi-conservative as proven by Meselson and Stahl.
A: RNA polymerase requires a primer to start transcription.
R: RNA polymerase reads the template strand 3'→5' and synthesises RNA 5'→3'.
A: mRNA in eukaryotes is shorter than the original DNA gene.
R: Introns (non-coding sequences) are removed during splicing.